OPN1SW protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OPN1SW

Opsin 1, short wave sensitive. (349 aa)

Predicted Functional Partners:

LOC102417269

0.964

GNAT2

0.934

GNGT2

0.887

RGR

0.848

LOC102432910

0.841

GNB3

0.831

GNB5

0.792

GNAT3

0.792

GNG2

0.789

GNB1

0.774

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAT2	GNAT3	ENSMLUP00000003980	ENSMLUP00000018925	G protein subunit alpha transducin 2.	G protein subunit alpha transducin 3.	0.952
GNAT2	GNB1	ENSMLUP00000003980	ENSMLUP00000003650	G protein subunit alpha transducin 2.	G protein subunit beta 1.	0.981
GNAT2	GNB3	ENSMLUP00000003980	ENSMLUP00000006150	G protein subunit alpha transducin 2.	G protein subunit beta 3.	0.987
GNAT2	GNB5	ENSMLUP00000003980	ENSMLUP00000006291	G protein subunit alpha transducin 2.	G protein subunit beta 5.	0.944
GNAT2	GNG2	ENSMLUP00000003980	ENSMLUP00000001955	G protein subunit alpha transducin 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.894
GNAT2	GNGT2	ENSMLUP00000003980	ENSMLUP00000011781	G protein subunit alpha transducin 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.946
GNAT2	LOC102417269	ENSMLUP00000003980	ENSMLUP00000013008	G protein subunit alpha transducin 2.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.887
GNAT2	LOC102432910	ENSMLUP00000003980	ENSMLUP00000021873	G protein subunit alpha transducin 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.938
GNAT2	OPN1SW	ENSMLUP00000003980	ENSMLUP00000001208	G protein subunit alpha transducin 2.	Opsin 1, short wave sensitive.	0.934
GNAT2	RGR	ENSMLUP00000003980	ENSMLUP00000015474	G protein subunit alpha transducin 2.	Retinal G protein coupled receptor; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.819
GNAT3	GNAT2	ENSMLUP00000018925	ENSMLUP00000003980	G protein subunit alpha transducin 3.	G protein subunit alpha transducin 2.	0.952
GNAT3	GNB1	ENSMLUP00000018925	ENSMLUP00000003650	G protein subunit alpha transducin 3.	G protein subunit beta 1.	0.926
GNAT3	GNB3	ENSMLUP00000018925	ENSMLUP00000006150	G protein subunit alpha transducin 3.	G protein subunit beta 3.	0.976
GNAT3	GNB5	ENSMLUP00000018925	ENSMLUP00000006291	G protein subunit alpha transducin 3.	G protein subunit beta 5.	0.902
GNAT3	GNG2	ENSMLUP00000018925	ENSMLUP00000001955	G protein subunit alpha transducin 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.894
GNAT3	GNGT2	ENSMLUP00000018925	ENSMLUP00000011781	G protein subunit alpha transducin 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.854
GNAT3	LOC102417269	ENSMLUP00000018925	ENSMLUP00000013008	G protein subunit alpha transducin 3.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.796
GNAT3	LOC102432910	ENSMLUP00000018925	ENSMLUP00000021873	G protein subunit alpha transducin 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.925
GNAT3	OPN1SW	ENSMLUP00000018925	ENSMLUP00000001208	G protein subunit alpha transducin 3.	Opsin 1, short wave sensitive.	0.792
GNAT3	RGR	ENSMLUP00000018925	ENSMLUP00000015474	G protein subunit alpha transducin 3.	Retinal G protein coupled receptor; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.777