GTF3C2 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GTF3C2

General transcription factor IIIC subunit 2. (911 aa)

Predicted Functional Partners:

GTF3C3

0.993

GTF3C4

0.991

GTF3C5

0.990

GTF3C1

0.977

GTF3C6

0.920

POLR3A

0.822

BRF1

0.775

POLR3C

0.771

G1PBB6_MYOLU

0.763

BDP1

0.749

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP1	BRF1	ENSMLUP00000001171	ENSMLUP00000012320	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.999
BDP1	GTF3C1	ENSMLUP00000001171	ENSMLUP00000004664	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 1.	0.865
BDP1	GTF3C2	ENSMLUP00000001171	ENSMLUP00000001238	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 2.	0.749
BDP1	GTF3C3	ENSMLUP00000001171	ENSMLUP00000018807	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 3.	0.983
BDP1	GTF3C4	ENSMLUP00000001171	ENSMLUP00000010516	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 4.	0.704
BDP1	GTF3C5	ENSMLUP00000001171	ENSMLUP00000006115	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 5.	0.910
BDP1	POLR3A	ENSMLUP00000001171	ENSMLUP00000010520	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
BDP1	POLR3C	ENSMLUP00000001171	ENSMLUP00000003699	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
BRF1	BDP1	ENSMLUP00000012320	ENSMLUP00000001171	BRF1 RNA polymerase III transcription initiation factor subunit.	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	0.999
BRF1	GTF3C1	ENSMLUP00000012320	ENSMLUP00000004664	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.893
BRF1	GTF3C2	ENSMLUP00000012320	ENSMLUP00000001238	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.775
BRF1	GTF3C3	ENSMLUP00000012320	ENSMLUP00000018807	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.998
BRF1	GTF3C4	ENSMLUP00000012320	ENSMLUP00000010516	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 4.	0.873
BRF1	GTF3C5	ENSMLUP00000012320	ENSMLUP00000006115	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.907
BRF1	GTF3C6	ENSMLUP00000012320	ENSMLUP00000012662	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 6.	0.729
BRF1	POLR3A	ENSMLUP00000012320	ENSMLUP00000010520	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
BRF1	POLR3C	ENSMLUP00000012320	ENSMLUP00000003699	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
G1PBB6_MYOLU	GTF3C2	ENSMLUP00000007633	ENSMLUP00000001238	Uncharacterized protein.	General transcription factor IIIC subunit 2.	0.763
G1PBB6_MYOLU	POLR3A	ENSMLUP00000007633	ENSMLUP00000010520	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.576
G1PBB6_MYOLU	POLR3C	ENSMLUP00000007633	ENSMLUP00000003699	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.562