TMEM71 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TMEM71

Transmembrane protein 71. (297 aa)

Predicted Functional Partners:

KLHDC8A

0.728

CCDC18

0.681

RAB42

0.670

GAS2L3

0.573

RIMS2

0.553

LOC102433864

0.473

G1Q4U1_MYOLU

0.473

STYK1

0.470

GNG5

0.440

G1Q563_MYOLU

0.440

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC18	GAS2L3	ENSMLUP00000005372	ENSMLUP00000004466	Coiled-coil domain containing 18.	Growth arrest specific 2 like 3.	0.483
CCDC18	KLHDC8A	ENSMLUP00000005372	ENSMLUP00000010418	Coiled-coil domain containing 18.	Kelch domain containing 8A.	0.711
CCDC18	RAB42	ENSMLUP00000005372	ENSMLUP00000011458	Coiled-coil domain containing 18.	RAB42, member RAS oncogene family.	0.626
CCDC18	TMEM71	ENSMLUP00000005372	ENSMLUP00000001385	Coiled-coil domain containing 18.	Transmembrane protein 71.	0.681
G1Q4U1_MYOLU	TMEM71	ENSMLUP00000018724	ENSMLUP00000001385	Uncharacterized protein.	Transmembrane protein 71.	0.473
G1Q563_MYOLU	KLHDC8A	ENSMLUP00000018846	ENSMLUP00000010418	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Kelch domain containing 8A.	0.465
G1Q563_MYOLU	TMEM71	ENSMLUP00000018846	ENSMLUP00000001385	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Transmembrane protein 71.	0.440
GAS2L3	CCDC18	ENSMLUP00000004466	ENSMLUP00000005372	Growth arrest specific 2 like 3.	Coiled-coil domain containing 18.	0.483
GAS2L3	KLHDC8A	ENSMLUP00000004466	ENSMLUP00000010418	Growth arrest specific 2 like 3.	Kelch domain containing 8A.	0.619
GAS2L3	RAB42	ENSMLUP00000004466	ENSMLUP00000011458	Growth arrest specific 2 like 3.	RAB42, member RAS oncogene family.	0.588
GAS2L3	TMEM71	ENSMLUP00000004466	ENSMLUP00000001385	Growth arrest specific 2 like 3.	Transmembrane protein 71.	0.573
GNG5	KLHDC8A	ENSMLUP00000014606	ENSMLUP00000010418	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Kelch domain containing 8A.	0.465
GNG5	TMEM71	ENSMLUP00000014606	ENSMLUP00000001385	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Transmembrane protein 71.	0.440
KLHDC8A	CCDC18	ENSMLUP00000010418	ENSMLUP00000005372	Kelch domain containing 8A.	Coiled-coil domain containing 18.	0.711
KLHDC8A	G1Q563_MYOLU	ENSMLUP00000010418	ENSMLUP00000018846	Kelch domain containing 8A.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.465
KLHDC8A	GAS2L3	ENSMLUP00000010418	ENSMLUP00000004466	Kelch domain containing 8A.	Growth arrest specific 2 like 3.	0.619
KLHDC8A	GNG5	ENSMLUP00000010418	ENSMLUP00000014606	Kelch domain containing 8A.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.465
KLHDC8A	RAB42	ENSMLUP00000010418	ENSMLUP00000011458	Kelch domain containing 8A.	RAB42, member RAS oncogene family.	0.682
KLHDC8A	TMEM71	ENSMLUP00000010418	ENSMLUP00000001385	Kelch domain containing 8A.	Transmembrane protein 71.	0.728
LOC102433864	TMEM71	ENSMLUP00000005947	ENSMLUP00000001385	Uncharacterized protein.	Transmembrane protein 71.	0.473