APOD protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

APOD

Apolipoprotein D. (212 aa)

Predicted Functional Partners:

APOA2

0.971

G1PKJ1_MYOLU

0.916

APOA4

0.855

SCG5

0.829

RPE

0.793

TTR

0.779

VAPA

0.774

APOC3

0.727

FNIP2

0.685

IARS1

0.682

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOA2	APOA4	ENSMLUP00000004170	ENSMLUP00000011325	Apolipoprotein A2.	Uncharacterized protein.	0.998
APOA2	APOC3	ENSMLUP00000004170	ENSMLUP00000020546	Apolipoprotein A2.	Uncharacterized protein.	0.999
APOA2	APOD	ENSMLUP00000004170	ENSMLUP00000001427	Apolipoprotein A2.	Apolipoprotein D.	0.971
APOA2	G1PKJ1_MYOLU	ENSMLUP00000004170	ENSMLUP00000011321	Apolipoprotein A2.	Uncharacterized protein.	0.999
APOA2	TTR	ENSMLUP00000004170	ENSMLUP00000003316	Apolipoprotein A2.	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.	0.889
APOA4	APOA2	ENSMLUP00000011325	ENSMLUP00000004170	Uncharacterized protein.	Apolipoprotein A2.	0.998
APOA4	APOC3	ENSMLUP00000011325	ENSMLUP00000020546	Uncharacterized protein.	Uncharacterized protein.	0.993
APOA4	APOD	ENSMLUP00000011325	ENSMLUP00000001427	Uncharacterized protein.	Apolipoprotein D.	0.855
APOA4	G1PKJ1_MYOLU	ENSMLUP00000011325	ENSMLUP00000011321	Uncharacterized protein.	Uncharacterized protein.	0.930
APOA4	TTR	ENSMLUP00000011325	ENSMLUP00000003316	Uncharacterized protein.	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.	0.765
APOC3	APOA2	ENSMLUP00000020546	ENSMLUP00000004170	Uncharacterized protein.	Apolipoprotein A2.	0.999
APOC3	APOA4	ENSMLUP00000020546	ENSMLUP00000011325	Uncharacterized protein.	Uncharacterized protein.	0.993
APOC3	APOD	ENSMLUP00000020546	ENSMLUP00000001427	Uncharacterized protein.	Apolipoprotein D.	0.727
APOC3	G1PKJ1_MYOLU	ENSMLUP00000020546	ENSMLUP00000011321	Uncharacterized protein.	Uncharacterized protein.	0.998
APOC3	TTR	ENSMLUP00000020546	ENSMLUP00000003316	Uncharacterized protein.	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.	0.612
APOD	APOA2	ENSMLUP00000001427	ENSMLUP00000004170	Apolipoprotein D.	Apolipoprotein A2.	0.971
APOD	APOA4	ENSMLUP00000001427	ENSMLUP00000011325	Apolipoprotein D.	Uncharacterized protein.	0.855
APOD	APOC3	ENSMLUP00000001427	ENSMLUP00000020546	Apolipoprotein D.	Uncharacterized protein.	0.727
APOD	FNIP2	ENSMLUP00000001427	ENSMLUP00000004712	Apolipoprotein D.	Folliculin interacting protein 2.	0.685
APOD	G1PKJ1_MYOLU	ENSMLUP00000001427	ENSMLUP00000011321	Apolipoprotein D.	Uncharacterized protein.	0.916