GTF2IRD1 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GTF2IRD1

GTF2I repeat domain containing 1. (1106 aa)

Predicted Functional Partners:

HDAC3

0.824

PIAS2

0.792

G1Q4C9_MYOLU

0.792

CLIP2

0.786

G1PCR2_MYOLU

0.739

NSUN5

0.692

SORCS1

0.683

ZMYM2

0.683

ZMYM5

0.683

LOC102430330

0.680

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLIP2	GTF2IRD1	ENSMLUP00000001526	ENSMLUP00000001537	CAP-Gly domain containing linker protein 2.	GTF2I repeat domain containing 1.	0.786
CLIP2	NSUN5	ENSMLUP00000001526	ENSMLUP00000007635	CAP-Gly domain containing linker protein 2.	NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.416
G1PCR2_MYOLU	G1Q4C9_MYOLU	ENSMLUP00000008220	ENSMLUP00000018562	Uncharacterized protein.	Uncharacterized protein.	0.731
G1PCR2_MYOLU	GTF2IRD1	ENSMLUP00000008220	ENSMLUP00000001537	Uncharacterized protein.	GTF2I repeat domain containing 1.	0.739
G1PCR2_MYOLU	PIAS2	ENSMLUP00000008220	ENSMLUP00000008123	Uncharacterized protein.	Uncharacterized protein.	0.731
G1Q4C9_MYOLU	G1PCR2_MYOLU	ENSMLUP00000018562	ENSMLUP00000008220	Uncharacterized protein.	Uncharacterized protein.	0.731
G1Q4C9_MYOLU	GTF2IRD1	ENSMLUP00000018562	ENSMLUP00000001537	Uncharacterized protein.	GTF2I repeat domain containing 1.	0.792
GTF2IRD1	CLIP2	ENSMLUP00000001537	ENSMLUP00000001526	GTF2I repeat domain containing 1.	CAP-Gly domain containing linker protein 2.	0.786
GTF2IRD1	G1PCR2_MYOLU	ENSMLUP00000001537	ENSMLUP00000008220	GTF2I repeat domain containing 1.	Uncharacterized protein.	0.739
GTF2IRD1	G1Q4C9_MYOLU	ENSMLUP00000001537	ENSMLUP00000018562	GTF2I repeat domain containing 1.	Uncharacterized protein.	0.792
GTF2IRD1	HDAC3	ENSMLUP00000001537	ENSMLUP00000007910	GTF2I repeat domain containing 1.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.824
GTF2IRD1	LOC102430330	ENSMLUP00000001537	ENSMLUP00000001610	GTF2I repeat domain containing 1.	Olfactory receptor.	0.680
GTF2IRD1	NSUN5	ENSMLUP00000001537	ENSMLUP00000007635	GTF2I repeat domain containing 1.	NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.692
GTF2IRD1	PIAS2	ENSMLUP00000001537	ENSMLUP00000008123	GTF2I repeat domain containing 1.	Uncharacterized protein.	0.792
GTF2IRD1	SORCS1	ENSMLUP00000001537	ENSMLUP00000001476	GTF2I repeat domain containing 1.	Sortilin related VPS10 domain containing receptor 1.	0.683
GTF2IRD1	ZMYM2	ENSMLUP00000001537	ENSMLUP00000011241	GTF2I repeat domain containing 1.	Zinc finger MYM-type containing 2.	0.683
GTF2IRD1	ZMYM5	ENSMLUP00000001537	ENSMLUP00000021802	GTF2I repeat domain containing 1.	Zinc finger MYM-type containing 5.	0.683
HDAC3	GTF2IRD1	ENSMLUP00000007910	ENSMLUP00000001537	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	GTF2I repeat domain containing 1.	0.824
HDAC3	ZMYM2	ENSMLUP00000007910	ENSMLUP00000011241	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Zinc finger MYM-type containing 2.	0.415
HDAC3	ZMYM5	ENSMLUP00000007910	ENSMLUP00000021802	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Zinc finger MYM-type containing 5.	0.415