MTIF3 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MTIF3

Mitochondrial translational initiation factor 3. (280 aa)

Predicted Functional Partners:

MRPS6

0.983

RPS15

0.978

RPS11

0.963

MRPS16

0.962

RPS5

0.944

CCDC105

0.944

MRPS7

0.944

MRPS9

0.942

MRPS12

0.942

RPS23

0.942

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC105	MRPS12	ENSMLUP00000013461	ENSMLUP00000005548	Coiled-coil domain containing 105.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.984
CCDC105	MRPS16	ENSMLUP00000013461	ENSMLUP00000017939	Coiled-coil domain containing 105.	Mitochondrial ribosomal protein S16.	0.987
CCDC105	MRPS6	ENSMLUP00000013461	ENSMLUP00000016588	Coiled-coil domain containing 105.	Mitochondrial ribosomal protein S6.	0.986
CCDC105	MRPS9	ENSMLUP00000013461	ENSMLUP00000001571	Coiled-coil domain containing 105.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.988
CCDC105	MTIF3	ENSMLUP00000013461	ENSMLUP00000001974	Coiled-coil domain containing 105.	Mitochondrial translational initiation factor 3.	0.944
CCDC105	RPS11	ENSMLUP00000013461	ENSMLUP00000017248	Coiled-coil domain containing 105.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.990
CCDC105	RPS15	ENSMLUP00000013461	ENSMLUP00000019007	Coiled-coil domain containing 105.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.990
CCDC105	RPS23	ENSMLUP00000013461	ENSMLUP00000012684	Coiled-coil domain containing 105.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.979
MRPS12	CCDC105	ENSMLUP00000005548	ENSMLUP00000013461	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Coiled-coil domain containing 105.	0.984
MRPS12	MRPS16	ENSMLUP00000005548	ENSMLUP00000017939	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S16.	0.999
MRPS12	MRPS6	ENSMLUP00000005548	ENSMLUP00000016588	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S6.	0.999
MRPS12	MRPS7	ENSMLUP00000005548	ENSMLUP00000013879	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S7.	0.999
MRPS12	MRPS9	ENSMLUP00000005548	ENSMLUP00000001571	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
MRPS12	MTIF3	ENSMLUP00000005548	ENSMLUP00000001974	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial translational initiation factor 3.	0.942
MRPS12	RPS11	ENSMLUP00000005548	ENSMLUP00000017248	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.997
MRPS12	RPS15	ENSMLUP00000005548	ENSMLUP00000019007	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.997
MRPS12	RPS23	ENSMLUP00000005548	ENSMLUP00000012684	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.907
MRPS12	RPS5	ENSMLUP00000005548	ENSMLUP00000011506	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.996
MRPS16	CCDC105	ENSMLUP00000017939	ENSMLUP00000013461	Mitochondrial ribosomal protein S16.	Coiled-coil domain containing 105.	0.987
MRPS16	MRPS12	ENSMLUP00000017939	ENSMLUP00000005548	Mitochondrial ribosomal protein S16.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999