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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARBP1TAR (HIV-1) RNA binding protein 1. (1376 aa)    
Predicted Functional Partners:
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.924
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.919
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.919
MRPL21
Mitochondrial ribosomal protein L21.
   
   0.911
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.900
MRPL43
Mitochondrial ribosomal protein L43.
    
   0.897
MTREX
Mtr4 exosome RNA helicase.
   
    0.895
GTPBP8
GTP binding protein 8 (putative).
  
 
 0.887
UTP20
UTP20 small subunit processome component.
   
    0.883
PDCD11
Programmed cell death 11.
  
   0.871
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
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