G1NZF3_MYOLU protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G1NZF3_MYOLU

Uncharacterized protein. (855 aa)

Predicted Functional Partners:

MTREX

0.984

UBXN7

0.981

RBM28

0.947

RPF2

0.932

DDX56

0.926

NOM1

0.917

NOC2L

0.904

GTPBP4

0.898

POLR1A

0.896

GNL2

0.892

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX56	G1NZF3_MYOLU	ENSMLUP00000003194	ENSMLUP00000002840	DEAD-box helicase 56.	Uncharacterized protein.	0.926
DDX56	GNL2	ENSMLUP00000003194	ENSMLUP00000015629	DEAD-box helicase 56.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.963
DDX56	GTPBP4	ENSMLUP00000003194	ENSMLUP00000019092	DEAD-box helicase 56.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.964
DDX56	MTREX	ENSMLUP00000003194	ENSMLUP00000001067	DEAD-box helicase 56.	Mtr4 exosome RNA helicase.	0.896
DDX56	NOC2L	ENSMLUP00000003194	ENSMLUP00000007352	DEAD-box helicase 56.	NOC2 like nucleolar associated transcriptional repressor.	0.968
DDX56	NOM1	ENSMLUP00000003194	ENSMLUP00000008336	DEAD-box helicase 56.	Nucleolar protein with MIF4G domain 1.	0.862
DDX56	POLR1A	ENSMLUP00000003194	ENSMLUP00000014337	DEAD-box helicase 56.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.772
DDX56	RBM28	ENSMLUP00000003194	ENSMLUP00000001997	DEAD-box helicase 56.	RNA binding motif protein 28.	0.981
DDX56	RPF2	ENSMLUP00000003194	ENSMLUP00000005186	DEAD-box helicase 56.	Ribosome production factor 2 homolog.	0.995
G1NZF3_MYOLU	DDX56	ENSMLUP00000002840	ENSMLUP00000003194	Uncharacterized protein.	DEAD-box helicase 56.	0.926
G1NZF3_MYOLU	GNL2	ENSMLUP00000002840	ENSMLUP00000015629	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.892
G1NZF3_MYOLU	GTPBP4	ENSMLUP00000002840	ENSMLUP00000019092	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.898
G1NZF3_MYOLU	MTREX	ENSMLUP00000002840	ENSMLUP00000001067	Uncharacterized protein.	Mtr4 exosome RNA helicase.	0.984
G1NZF3_MYOLU	NOC2L	ENSMLUP00000002840	ENSMLUP00000007352	Uncharacterized protein.	NOC2 like nucleolar associated transcriptional repressor.	0.904
G1NZF3_MYOLU	NOM1	ENSMLUP00000002840	ENSMLUP00000008336	Uncharacterized protein.	Nucleolar protein with MIF4G domain 1.	0.917
G1NZF3_MYOLU	POLR1A	ENSMLUP00000002840	ENSMLUP00000014337	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.896
G1NZF3_MYOLU	RBM28	ENSMLUP00000002840	ENSMLUP00000001997	Uncharacterized protein.	RNA binding motif protein 28.	0.947
G1NZF3_MYOLU	RPF2	ENSMLUP00000002840	ENSMLUP00000005186	Uncharacterized protein.	Ribosome production factor 2 homolog.	0.932
G1NZF3_MYOLU	UBXN7	ENSMLUP00000002840	ENSMLUP00000009773	Uncharacterized protein.	UBX domain-containing protein 7.	0.981
GNL2	DDX56	ENSMLUP00000015629	ENSMLUP00000003194	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	DEAD-box helicase 56.	0.963