HNRNPAB protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HNRNPAB

Heterogeneous nuclear ribonucleoprotein A/B. (334 aa)

Predicted Functional Partners:

HNRNPU

0.916

SRSF2

0.889

SYNCRIP

0.883

HNRNPC

0.872

HNRNPR

0.863

HNRNPA2B1

0.845

LOC102430786

0.845

HNRNPL

0.841

HNRNPH3

0.825

TNPO1

0.823

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HNRNPA2B1	HNRNPAB	ENSMLUP00000006912	ENSMLUP00000003070	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein A/B.	0.845
HNRNPA2B1	HNRNPC	ENSMLUP00000006912	ENSMLUP00000007166	Uncharacterized protein.	RRM domain-containing protein.	0.964
HNRNPA2B1	HNRNPH3	ENSMLUP00000006912	ENSMLUP00000000132	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein H3.	0.898
HNRNPA2B1	HNRNPL	ENSMLUP00000006912	ENSMLUP00000000883	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein L.	0.940
HNRNPA2B1	HNRNPR	ENSMLUP00000006912	ENSMLUP00000006921	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein R.	0.920
HNRNPA2B1	HNRNPU	ENSMLUP00000006912	ENSMLUP00000000438	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.958
HNRNPA2B1	SRSF2	ENSMLUP00000006912	ENSMLUP00000022051	Uncharacterized protein.	RRM domain-containing protein.	0.869
HNRNPA2B1	SYNCRIP	ENSMLUP00000006912	ENSMLUP00000006326	Uncharacterized protein.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.905
HNRNPA2B1	TNPO1	ENSMLUP00000006912	ENSMLUP00000014875	Uncharacterized protein.	Transportin 1.	0.546
HNRNPAB	HNRNPA2B1	ENSMLUP00000003070	ENSMLUP00000006912	Heterogeneous nuclear ribonucleoprotein A/B.	Uncharacterized protein.	0.845
HNRNPAB	HNRNPC	ENSMLUP00000003070	ENSMLUP00000007166	Heterogeneous nuclear ribonucleoprotein A/B.	RRM domain-containing protein.	0.872
HNRNPAB	HNRNPH3	ENSMLUP00000003070	ENSMLUP00000000132	Heterogeneous nuclear ribonucleoprotein A/B.	Heterogeneous nuclear ribonucleoprotein H3.	0.825
HNRNPAB	HNRNPL	ENSMLUP00000003070	ENSMLUP00000000883	Heterogeneous nuclear ribonucleoprotein A/B.	Heterogeneous nuclear ribonucleoprotein L.	0.841
HNRNPAB	HNRNPR	ENSMLUP00000003070	ENSMLUP00000006921	Heterogeneous nuclear ribonucleoprotein A/B.	Heterogeneous nuclear ribonucleoprotein R.	0.863
HNRNPAB	HNRNPU	ENSMLUP00000003070	ENSMLUP00000000438	Heterogeneous nuclear ribonucleoprotein A/B.	Heterogeneous nuclear ribonucleoprotein U.	0.916
HNRNPAB	LOC102430786	ENSMLUP00000003070	ENSMLUP00000016496	Heterogeneous nuclear ribonucleoprotein A/B.	Uncharacterized protein.	0.845
HNRNPAB	SRSF2	ENSMLUP00000003070	ENSMLUP00000022051	Heterogeneous nuclear ribonucleoprotein A/B.	RRM domain-containing protein.	0.889
HNRNPAB	SYNCRIP	ENSMLUP00000003070	ENSMLUP00000006326	Heterogeneous nuclear ribonucleoprotein A/B.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.883
HNRNPAB	TNPO1	ENSMLUP00000003070	ENSMLUP00000014875	Heterogeneous nuclear ribonucleoprotein A/B.	Transportin 1.	0.823
HNRNPC	HNRNPA2B1	ENSMLUP00000007166	ENSMLUP00000006912	RRM domain-containing protein.	Uncharacterized protein.	0.964