STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCHD1Structural maintenance of chromosomes flexible hinge domain containing 1. (2005 aa)    
Predicted Functional Partners:
AHCTF1
AT-hook containing transcription factor 1.
   
  
 0.836
PDS5A
PDS5 cohesin associated factor A.
   
  
 0.832
SCAF11
SR-related CTD associated factor 11.
   
    0.818
EMILIN2
Elastin microfibril interfacer 2.
 
    
 0.816
PHIP
Pleckstrin homology domain interacting protein.
   
    0.813
DMXL1
Dmx like 1.
   
    0.811
LRIF1
Ligand dependent nuclear receptor interacting factor 1.
    
 
 0.778
MBTD1
Mbt domain containing 1.
   
  
 0.725
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
   
    0.690
TRIM28
Tripartite motif containing 28.
   
 
 0.685
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.