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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT12tRNA methyltransferase 12 homolog. (439 aa)    
Predicted Functional Partners:
TRMT112
tRNA methyltransferase subunit 11-2.
   
 
 0.989
TYW3
tRNA-yW synthesizing protein 3 homolog.
  
 
 0.806
TYW5
tRNA-yW synthesizing protein 5.
 
    
 0.785
G1PN63_MYOLU
Flavodoxin-like domain-containing protein.
  
 
 0.758
RFK
Riboflavin kinase.
     
 0.716
WDYHV1
WDYHV motif containing 1.
   
  
 0.690
ZCCHC4
Zinc finger CCHC-type containing 4.
   
  
 0.663
LCMT2
Leucine carboxyl methyltransferase 2.
   
  
 0.653
TRMO
tRNA methyltransferase O.
   
  
 0.641
SF3B3
Splicing factor 3b subunit 3.
   
 
  0.632
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.