RBM3 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM3

RNA binding motif protein 3. (161 aa)

Predicted Functional Partners:

HNRNPC

0.800

EIF3H

0.784

SRSF9

0.784

CSTF2

0.782

SRSF1

0.782

SF3B2

0.777

HNRNPK

0.773

G1PYS5_MYOLU

0.773

G1Q4C6_MYOLU

0.773

FTSJ1

0.770

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSTF2	G1PYS5_MYOLU	ENSMLUP00000004186	ENSMLUP00000016607	Cleavage stimulation factor subunit 2.	Uncharacterized protein.	0.668
CSTF2	G1Q4C6_MYOLU	ENSMLUP00000004186	ENSMLUP00000018559	Cleavage stimulation factor subunit 2.	Uncharacterized protein.	0.668
CSTF2	HNRNPC	ENSMLUP00000004186	ENSMLUP00000007166	Cleavage stimulation factor subunit 2.	RRM domain-containing protein.	0.540
CSTF2	HNRNPK	ENSMLUP00000004186	ENSMLUP00000005368	Cleavage stimulation factor subunit 2.	Uncharacterized protein.	0.668
CSTF2	RBM3	ENSMLUP00000004186	ENSMLUP00000003639	Cleavage stimulation factor subunit 2.	RNA binding motif protein 3.	0.782
CSTF2	SF3B2	ENSMLUP00000004186	ENSMLUP00000010170	Cleavage stimulation factor subunit 2.	Splicing factor 3b subunit 2.	0.775
CSTF2	SRSF1	ENSMLUP00000004186	ENSMLUP00000010054	Cleavage stimulation factor subunit 2.	Uncharacterized protein.	0.513
EIF3H	HNRNPC	ENSMLUP00000001847	ENSMLUP00000007166	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF- 2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribos [...]	RRM domain-containing protein.	0.756
EIF3H	RBM3	ENSMLUP00000001847	ENSMLUP00000003639	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF- 2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribos [...]	RNA binding motif protein 3.	0.784
FTSJ1	RBM3	ENSMLUP00000003622	ENSMLUP00000003639	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	RNA binding motif protein 3.	0.770
G1PYS5_MYOLU	CSTF2	ENSMLUP00000016607	ENSMLUP00000004186	Uncharacterized protein.	Cleavage stimulation factor subunit 2.	0.668
G1PYS5_MYOLU	HNRNPC	ENSMLUP00000016607	ENSMLUP00000007166	Uncharacterized protein.	RRM domain-containing protein.	0.980
G1PYS5_MYOLU	RBM3	ENSMLUP00000016607	ENSMLUP00000003639	Uncharacterized protein.	RNA binding motif protein 3.	0.773
G1PYS5_MYOLU	SRSF1	ENSMLUP00000016607	ENSMLUP00000010054	Uncharacterized protein.	Uncharacterized protein.	0.906
G1PYS5_MYOLU	SRSF9	ENSMLUP00000016607	ENSMLUP00000009421	Uncharacterized protein.	Serine and arginine rich splicing factor 9.	0.804
G1Q4C6_MYOLU	CSTF2	ENSMLUP00000018559	ENSMLUP00000004186	Uncharacterized protein.	Cleavage stimulation factor subunit 2.	0.668
G1Q4C6_MYOLU	HNRNPC	ENSMLUP00000018559	ENSMLUP00000007166	Uncharacterized protein.	RRM domain-containing protein.	0.980
G1Q4C6_MYOLU	RBM3	ENSMLUP00000018559	ENSMLUP00000003639	Uncharacterized protein.	RNA binding motif protein 3.	0.773
G1Q4C6_MYOLU	SRSF1	ENSMLUP00000018559	ENSMLUP00000010054	Uncharacterized protein.	Uncharacterized protein.	0.906
G1Q4C6_MYOLU	SRSF9	ENSMLUP00000018559	ENSMLUP00000009421	Uncharacterized protein.	Serine and arginine rich splicing factor 9.	0.804