SLBP protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLBP

Stem-loop binding protein. (233 aa)

Predicted Functional Partners:

NCBP1

0.981

MIF4GD

0.975

NCBP2

0.960

G1Q7Y0_MYOLU

0.960

EIF4E

0.959

G1QA52_MYOLU

0.959

ERI1

0.957

CTIF

0.950

LSM11

0.887

LSM10

0.884

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTIF	EIF4E	ENSMLUP00000002753	ENSMLUP00000004593	Cap binding complex dependent translation initiation factor.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.441
CTIF	G1Q7Y0_MYOLU	ENSMLUP00000002753	ENSMLUP00000019813	Cap binding complex dependent translation initiation factor.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.453
CTIF	G1QA52_MYOLU	ENSMLUP00000002753	ENSMLUP00000020585	Cap binding complex dependent translation initiation factor.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.441
CTIF	NCBP1	ENSMLUP00000002753	ENSMLUP00000013854	Cap binding complex dependent translation initiation factor.	Nuclear cap binding protein subunit 1.	0.489
CTIF	NCBP2	ENSMLUP00000002753	ENSMLUP00000015957	Cap binding complex dependent translation initiation factor.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.453
CTIF	SLBP	ENSMLUP00000002753	ENSMLUP00000004026	Cap binding complex dependent translation initiation factor.	Stem-loop binding protein.	0.950
EIF4E	CTIF	ENSMLUP00000004593	ENSMLUP00000002753	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Cap binding complex dependent translation initiation factor.	0.441
EIF4E	G1Q7Y0_MYOLU	ENSMLUP00000004593	ENSMLUP00000019813	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.774
EIF4E	NCBP1	ENSMLUP00000004593	ENSMLUP00000013854	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap binding protein subunit 1.	0.887
EIF4E	NCBP2	ENSMLUP00000004593	ENSMLUP00000015957	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.774
EIF4E	SLBP	ENSMLUP00000004593	ENSMLUP00000004026	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Stem-loop binding protein.	0.959
ERI1	SLBP	ENSMLUP00000005740	ENSMLUP00000004026	Exoribonuclease 1.	Stem-loop binding protein.	0.957
G1Q7Y0_MYOLU	CTIF	ENSMLUP00000019813	ENSMLUP00000002753	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Cap binding complex dependent translation initiation factor.	0.453
G1Q7Y0_MYOLU	EIF4E	ENSMLUP00000019813	ENSMLUP00000004593	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.774
G1Q7Y0_MYOLU	G1QA52_MYOLU	ENSMLUP00000019813	ENSMLUP00000020585	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.662
G1Q7Y0_MYOLU	LSM10	ENSMLUP00000019813	ENSMLUP00000016472	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	LSM10, U7 small nuclear RNA associated.	0.971
G1Q7Y0_MYOLU	LSM11	ENSMLUP00000019813	ENSMLUP00000014518	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	LSM11, U7 small nuclear RNA associated.	0.656
G1Q7Y0_MYOLU	NCBP1	ENSMLUP00000019813	ENSMLUP00000013854	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap binding protein subunit 1.	0.999
G1Q7Y0_MYOLU	SLBP	ENSMLUP00000019813	ENSMLUP00000004026	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Stem-loop binding protein.	0.960
G1QA52_MYOLU	CTIF	ENSMLUP00000020585	ENSMLUP00000002753	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Cap binding complex dependent translation initiation factor.	0.441