SMARCE1 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMARCE1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (411 aa)

Predicted Functional Partners:

SMARCA4

0.999

SMARCB1

0.999

SMARCD1

0.999

SMARCC2

0.999

PBRM1

0.999

ARID2

0.998

BRD7

0.998

ARID1A

0.997

PHF10

0.997

SMARCD2

0.997

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	ARID2	ENSMLUP00000002271	ENSMLUP00000006324	AT-rich interaction domain 1A.	AT-rich interaction domain 2.	0.828
ARID1A	BRD7	ENSMLUP00000002271	ENSMLUP00000012097	AT-rich interaction domain 1A.	Bromo domain-containing protein.	0.617
ARID1A	PBRM1	ENSMLUP00000002271	ENSMLUP00000008015	AT-rich interaction domain 1A.	Polybromo 1.	0.930
ARID1A	PHF10	ENSMLUP00000002271	ENSMLUP00000006011	AT-rich interaction domain 1A.	PHD finger protein 10.	0.956
ARID1A	SMARCA4	ENSMLUP00000002271	ENSMLUP00000004094	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.990
ARID1A	SMARCB1	ENSMLUP00000002271	ENSMLUP00000004537	AT-rich interaction domain 1A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.997
ARID1A	SMARCC2	ENSMLUP00000002271	ENSMLUP00000006058	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.995
ARID1A	SMARCD1	ENSMLUP00000002271	ENSMLUP00000004662	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.996
ARID1A	SMARCD2	ENSMLUP00000002271	ENSMLUP00000010681	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.983
ARID1A	SMARCE1	ENSMLUP00000002271	ENSMLUP00000004194	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.997
ARID2	ARID1A	ENSMLUP00000006324	ENSMLUP00000002271	AT-rich interaction domain 2.	AT-rich interaction domain 1A.	0.828
ARID2	BRD7	ENSMLUP00000006324	ENSMLUP00000012097	AT-rich interaction domain 2.	Bromo domain-containing protein.	0.996
ARID2	PBRM1	ENSMLUP00000006324	ENSMLUP00000008015	AT-rich interaction domain 2.	Polybromo 1.	0.999
ARID2	PHF10	ENSMLUP00000006324	ENSMLUP00000006011	AT-rich interaction domain 2.	PHD finger protein 10.	0.988
ARID2	SMARCA4	ENSMLUP00000006324	ENSMLUP00000004094	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.994
ARID2	SMARCB1	ENSMLUP00000006324	ENSMLUP00000004537	AT-rich interaction domain 2.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.998
ARID2	SMARCC2	ENSMLUP00000006324	ENSMLUP00000006058	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.995
ARID2	SMARCD1	ENSMLUP00000006324	ENSMLUP00000004662	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.998
ARID2	SMARCD2	ENSMLUP00000006324	ENSMLUP00000010681	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.988
ARID2	SMARCE1	ENSMLUP00000006324	ENSMLUP00000004194	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.998