NAF1 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAF1

Nuclear assembly factor 1 ribonucleoprotein. (486 aa)

Predicted Functional Partners:

DKC1

0.998

NHP2

0.985

NOP10

0.984

TRUB1

0.955

TRUB2

0.941

TRNAU1AP

0.926

GAR1

0.886

RSL1D1

0.829

SNU13

0.817

RPP38

0.814

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DKC1	GAR1	ENSMLUP00000010867	ENSMLUP00000003438	Dyskerin pseudouridine synthase 1.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
DKC1	NAF1	ENSMLUP00000010867	ENSMLUP00000004212	Dyskerin pseudouridine synthase 1.	Nuclear assembly factor 1 ribonucleoprotein.	0.998
DKC1	NHP2	ENSMLUP00000010867	ENSMLUP00000003068	Dyskerin pseudouridine synthase 1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
DKC1	NOP10	ENSMLUP00000010867	ENSMLUP00000002529	Dyskerin pseudouridine synthase 1.	NOP10 ribonucleoprotein.	0.999
DKC1	RPP38	ENSMLUP00000010867	ENSMLUP00000019668	Dyskerin pseudouridine synthase 1.	Ribonuclease P/MRP subunit p38.	0.976
DKC1	RSL1D1	ENSMLUP00000010867	ENSMLUP00000000718	Dyskerin pseudouridine synthase 1.	Ribosomal L1 domain containing 1.	0.975
DKC1	SNU13	ENSMLUP00000010867	ENSMLUP00000002289	Dyskerin pseudouridine synthase 1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.993
DKC1	TRUB1	ENSMLUP00000010867	ENSMLUP00000016130	Dyskerin pseudouridine synthase 1.	TruB pseudouridine synthase family member 1.	0.525
DKC1	TRUB2	ENSMLUP00000010867	ENSMLUP00000004804	Dyskerin pseudouridine synthase 1.	TruB pseudouridine synthase family member 2.	0.451
GAR1	DKC1	ENSMLUP00000003438	ENSMLUP00000010867	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Dyskerin pseudouridine synthase 1.	0.999
GAR1	NAF1	ENSMLUP00000003438	ENSMLUP00000004212	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Nuclear assembly factor 1 ribonucleoprotein.	0.886
GAR1	NHP2	ENSMLUP00000003438	ENSMLUP00000003068	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
GAR1	NOP10	ENSMLUP00000003438	ENSMLUP00000002529	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	NOP10 ribonucleoprotein.	0.999
GAR1	RPP38	ENSMLUP00000003438	ENSMLUP00000019668	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonuclease P/MRP subunit p38.	0.975
GAR1	RSL1D1	ENSMLUP00000003438	ENSMLUP00000000718	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribosomal L1 domain containing 1.	0.909
GAR1	SNU13	ENSMLUP00000003438	ENSMLUP00000002289	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.981
GAR1	TRNAU1AP	ENSMLUP00000003438	ENSMLUP00000011455	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	tRNA selenocysteine 1 associated protein 1.	0.463
GAR1	TRUB1	ENSMLUP00000003438	ENSMLUP00000016130	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	TruB pseudouridine synthase family member 1.	0.995
GAR1	TRUB2	ENSMLUP00000003438	ENSMLUP00000004804	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	TruB pseudouridine synthase family member 2.	0.990
NAF1	DKC1	ENSMLUP00000004212	ENSMLUP00000010867	Nuclear assembly factor 1 ribonucleoprotein.	Dyskerin pseudouridine synthase 1.	0.998