CTDNEP1 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTDNEP1

CTD nuclear envelope phosphatase 1. (225 aa)

Predicted Functional Partners:

CNEP1R1

0.987

LPIN3

0.952

LPIN2

0.941

LPIN1

0.941

GTF2F1

0.924

LOC102422306

0.867

TIMM21

0.843

POLR2D

0.825

G1P1C7_MYOLU

0.809

POLR2G

0.809

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNEP1R1	CTDNEP1	ENSMLUP00000021938	ENSMLUP00000004229	Uncharacterized protein.	CTD nuclear envelope phosphatase 1.	0.987
CNEP1R1	LPIN1	ENSMLUP00000021938	ENSMLUP00000013063	Uncharacterized protein.	Lipin 1.	0.685
CNEP1R1	LPIN2	ENSMLUP00000021938	ENSMLUP00000003098	Uncharacterized protein.	Lipin 2.	0.683
CNEP1R1	LPIN3	ENSMLUP00000021938	ENSMLUP00000014790	Uncharacterized protein.	Lipin 3.	0.683
CTDNEP1	CNEP1R1	ENSMLUP00000004229	ENSMLUP00000021938	CTD nuclear envelope phosphatase 1.	Uncharacterized protein.	0.987
CTDNEP1	G1P1C7_MYOLU	ENSMLUP00000004229	ENSMLUP00000003611	CTD nuclear envelope phosphatase 1.	S1 domain-containing protein.	0.809
CTDNEP1	GTF2F1	ENSMLUP00000004229	ENSMLUP00000014153	CTD nuclear envelope phosphatase 1.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.924
CTDNEP1	LOC102422306	ENSMLUP00000004229	ENSMLUP00000000562	CTD nuclear envelope phosphatase 1.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.867
CTDNEP1	LPIN1	ENSMLUP00000004229	ENSMLUP00000013063	CTD nuclear envelope phosphatase 1.	Lipin 1.	0.941
CTDNEP1	LPIN2	ENSMLUP00000004229	ENSMLUP00000003098	CTD nuclear envelope phosphatase 1.	Lipin 2.	0.941
CTDNEP1	LPIN3	ENSMLUP00000004229	ENSMLUP00000014790	CTD nuclear envelope phosphatase 1.	Lipin 3.	0.952
CTDNEP1	POLR2D	ENSMLUP00000004229	ENSMLUP00000006259	CTD nuclear envelope phosphatase 1.	RNA polymerase II subunit D.	0.825
CTDNEP1	POLR2G	ENSMLUP00000004229	ENSMLUP00000010058	CTD nuclear envelope phosphatase 1.	RNA polymerase II subunit G.	0.809
CTDNEP1	TIMM21	ENSMLUP00000004229	ENSMLUP00000010421	CTD nuclear envelope phosphatase 1.	Translocase of inner mitochondrial membrane 21.	0.843
G1P1C7_MYOLU	CTDNEP1	ENSMLUP00000003611	ENSMLUP00000004229	S1 domain-containing protein.	CTD nuclear envelope phosphatase 1.	0.809
G1P1C7_MYOLU	GTF2F1	ENSMLUP00000003611	ENSMLUP00000014153	S1 domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.989
G1P1C7_MYOLU	POLR2D	ENSMLUP00000003611	ENSMLUP00000006259	S1 domain-containing protein.	RNA polymerase II subunit D.	0.998
GTF2F1	CTDNEP1	ENSMLUP00000014153	ENSMLUP00000004229	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	CTD nuclear envelope phosphatase 1.	0.924
GTF2F1	G1P1C7_MYOLU	ENSMLUP00000014153	ENSMLUP00000003611	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	S1 domain-containing protein.	0.989
GTF2F1	POLR2D	ENSMLUP00000014153	ENSMLUP00000006259	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase II subunit D.	0.996