DPCD protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DPCD

Deleted in primary ciliary dyskinesia homolog (mouse). (203 aa)

Predicted Functional Partners:

RUVBL1

0.955

RUVBL2

0.954

STK36

0.769

AK7

0.764

G1PGU3_MYOLU

0.748

ENSMLUP00000018685

0.748

G1NV57_MYOLU

0.704

TNN

0.704

TNC

0.704

TNR

0.704

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AK7	DPCD	ENSMLUP00000014672	ENSMLUP00000004509	Adenylate kinase 7.	Deleted in primary ciliary dyskinesia homolog (mouse).	0.764
AK7	STK36	ENSMLUP00000014672	ENSMLUP00000001402	Adenylate kinase 7.	Serine/threonine kinase 36.	0.611
DPCD	AK7	ENSMLUP00000004509	ENSMLUP00000014672	Deleted in primary ciliary dyskinesia homolog (mouse).	Adenylate kinase 7.	0.764
DPCD	ENSMLUP00000018685	ENSMLUP00000004509	ENSMLUP00000018685	Deleted in primary ciliary dyskinesia homolog (mouse).	annotation not available	0.748
DPCD	G1NV57_MYOLU	ENSMLUP00000004509	ENSMLUP00000001138	Deleted in primary ciliary dyskinesia homolog (mouse).	Uncharacterized protein.	0.704
DPCD	G1PGU3_MYOLU	ENSMLUP00000004509	ENSMLUP00000009872	Deleted in primary ciliary dyskinesia homolog (mouse).	Uncharacterized protein.	0.748
DPCD	RUVBL1	ENSMLUP00000004509	ENSMLUP00000003873	Deleted in primary ciliary dyskinesia homolog (mouse).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.955
DPCD	RUVBL2	ENSMLUP00000004509	ENSMLUP00000008501	Deleted in primary ciliary dyskinesia homolog (mouse).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.954
DPCD	STK36	ENSMLUP00000004509	ENSMLUP00000001402	Deleted in primary ciliary dyskinesia homolog (mouse).	Serine/threonine kinase 36.	0.769
DPCD	TNC	ENSMLUP00000004509	ENSMLUP00000013525	Deleted in primary ciliary dyskinesia homolog (mouse).	Tenascin C.	0.704
DPCD	TNN	ENSMLUP00000004509	ENSMLUP00000001154	Deleted in primary ciliary dyskinesia homolog (mouse).	Tenascin N.	0.704
DPCD	TNR	ENSMLUP00000004509	ENSMLUP00000014345	Deleted in primary ciliary dyskinesia homolog (mouse).	Tenascin R.	0.704
ENSMLUP00000018685	DPCD	ENSMLUP00000018685	ENSMLUP00000004509	annotation not available	Deleted in primary ciliary dyskinesia homolog (mouse).	0.748
ENSMLUP00000018685	RUVBL1	ENSMLUP00000018685	ENSMLUP00000003873	annotation not available	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.762
ENSMLUP00000018685	RUVBL2	ENSMLUP00000018685	ENSMLUP00000008501	annotation not available	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.775
G1NV57_MYOLU	DPCD	ENSMLUP00000001138	ENSMLUP00000004509	Uncharacterized protein.	Deleted in primary ciliary dyskinesia homolog (mouse).	0.704
G1NV57_MYOLU	TNC	ENSMLUP00000001138	ENSMLUP00000013525	Uncharacterized protein.	Tenascin C.	0.665
G1NV57_MYOLU	TNN	ENSMLUP00000001138	ENSMLUP00000001154	Uncharacterized protein.	Tenascin N.	0.857
G1NV57_MYOLU	TNR	ENSMLUP00000001138	ENSMLUP00000014345	Uncharacterized protein.	Tenascin R.	0.860
G1PGU3_MYOLU	DPCD	ENSMLUP00000009872	ENSMLUP00000004509	Uncharacterized protein.	Deleted in primary ciliary dyskinesia homolog (mouse).	0.748