OPN4 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GIT1	GIT2	ENSMLUP00000002766	ENSMLUP00000003752	GIT ArfGAP 1.	GIT ArfGAP 2.	0.980
GIT1	OPN4	ENSMLUP00000002766	ENSMLUP00000004532	GIT ArfGAP 1.	Opsin 4.	0.786
GIT2	GIT1	ENSMLUP00000003752	ENSMLUP00000002766	GIT ArfGAP 2.	GIT ArfGAP 1.	0.980
GIT2	OPN4	ENSMLUP00000003752	ENSMLUP00000004532	GIT ArfGAP 2.	Opsin 4.	0.910
GNAT2	GNAT3	ENSMLUP00000003980	ENSMLUP00000018925	G protein subunit alpha transducin 2.	G protein subunit alpha transducin 3.	0.971
GNAT2	GNB1	ENSMLUP00000003980	ENSMLUP00000003650	G protein subunit alpha transducin 2.	G protein subunit beta 1.	0.997
GNAT2	GNB2	ENSMLUP00000003980	ENSMLUP00000006184	G protein subunit alpha transducin 2.	G protein subunit beta 2.	0.975
GNAT2	GNB4	ENSMLUP00000003980	ENSMLUP00000006968	G protein subunit alpha transducin 2.	G protein subunit beta 4.	0.975
GNAT2	OPN4	ENSMLUP00000003980	ENSMLUP00000004532	G protein subunit alpha transducin 2.	Opsin 4.	0.847
GNAT2	PLCB4	ENSMLUP00000003980	ENSMLUP00000011388	G protein subunit alpha transducin 2.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.613
GNAT3	GNAT2	ENSMLUP00000018925	ENSMLUP00000003980	G protein subunit alpha transducin 3.	G protein subunit alpha transducin 2.	0.971
GNAT3	GNB1	ENSMLUP00000018925	ENSMLUP00000003650	G protein subunit alpha transducin 3.	G protein subunit beta 1.	0.971
GNAT3	GNB2	ENSMLUP00000018925	ENSMLUP00000006184	G protein subunit alpha transducin 3.	G protein subunit beta 2.	0.971
GNAT3	GNB4	ENSMLUP00000018925	ENSMLUP00000006968	G protein subunit alpha transducin 3.	G protein subunit beta 4.	0.971
GNAT3	OPN4	ENSMLUP00000018925	ENSMLUP00000004532	G protein subunit alpha transducin 3.	Opsin 4.	0.778
GNAT3	PLCB4	ENSMLUP00000018925	ENSMLUP00000011388	G protein subunit alpha transducin 3.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.959
GNB1	GNAT2	ENSMLUP00000003650	ENSMLUP00000003980	G protein subunit beta 1.	G protein subunit alpha transducin 2.	0.997
GNB1	GNAT3	ENSMLUP00000003650	ENSMLUP00000018925	G protein subunit beta 1.	G protein subunit alpha transducin 3.	0.971
GNB1	GNB2	ENSMLUP00000003650	ENSMLUP00000006184	G protein subunit beta 1.	G protein subunit beta 2.	0.650
GNB1	OPN4	ENSMLUP00000003650	ENSMLUP00000004532	G protein subunit beta 1.	Opsin 4.	0.819