STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD12-oxoglutarate and iron dependent oxygenase domain containing 1. (545 aa)    
Predicted Functional Partners:
SYCP3
Synaptonemal complex protein 3.
   
 
 0.962
LOC102425341
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.909
CPOX
Uncharacterized protein.
   
  
 0.785
CAPRIN1
Cell cycle associated protein 1.
      
 0.765
HERPUD2
HERPUD family member 2.
      
 0.764
TSR1
TSR1 ribosome maturation factor.
   
    0.762
L3HYPDH
Trans-L-3-hydroxyproline dehydratase.
    
  0.751
CRYM
Crystallin mu.
    
  0.737
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.734
BMS1
BMS1 ribosome biogenesis factor.
   
    0.730
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.