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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCPValosin containing protein; Belongs to the AAA ATPase family. (806 aa)    
Predicted Functional Partners:
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
   
 0.999
FAF1
Fas associated factor 1.
   
 0.999
UBXN7
UBX domain-containing protein 7.
   
 0.999
UBXN6
UBX domain protein 6.
    
 0.999
UBXN1
UBX domain protein 1.
   
 0.998
VCPKMT
Valosin containing protein lysine methyltransferase.
   
 0.998
UBXN4
UBX domain protein 4.
    
 0.998
UBXN2A
UBX domain protein 2A.
   
 0.998
FAF2
Fas associated factor family member 2.
   
 0.997
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.996
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
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