SRSF11 protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SRSF11

RRM domain-containing protein. (480 aa)

Predicted Functional Partners:

SRRM1

0.940

PNISR

0.929

SRSF9

0.926

RBM39

0.922

SRSF5

0.919

SRSF2

0.910

SRSF1

0.908

LOC102428014

0.908

SRSF7

0.908

SRSF4

0.907

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102428014	SRRM1	ENSMLUP00000014293	ENSMLUP00000005712	Uncharacterized protein.	Serine and arginine repetitive matrix 1.	0.744
LOC102428014	SRSF1	ENSMLUP00000014293	ENSMLUP00000010054	Uncharacterized protein.	Uncharacterized protein.	0.998
LOC102428014	SRSF11	ENSMLUP00000014293	ENSMLUP00000005676	Uncharacterized protein.	RRM domain-containing protein.	0.908
LOC102428014	SRSF2	ENSMLUP00000014293	ENSMLUP00000022051	Uncharacterized protein.	RRM domain-containing protein.	0.992
LOC102428014	SRSF4	ENSMLUP00000014293	ENSMLUP00000013443	Uncharacterized protein.	Serine and arginine rich splicing factor 4.	0.914
LOC102428014	SRSF5	ENSMLUP00000014293	ENSMLUP00000010873	Uncharacterized protein.	Serine and arginine rich splicing factor 5.	0.982
LOC102428014	SRSF9	ENSMLUP00000014293	ENSMLUP00000009421	Uncharacterized protein.	Serine and arginine rich splicing factor 9.	0.991
PNISR	RBM39	ENSMLUP00000004760	ENSMLUP00000002729	PNN interacting serine and arginine rich protein.	RNA binding motif protein 39.	0.834
PNISR	SRSF1	ENSMLUP00000004760	ENSMLUP00000010054	PNN interacting serine and arginine rich protein.	Uncharacterized protein.	0.546
PNISR	SRSF11	ENSMLUP00000004760	ENSMLUP00000005676	PNN interacting serine and arginine rich protein.	RRM domain-containing protein.	0.929
PNISR	SRSF4	ENSMLUP00000004760	ENSMLUP00000013443	PNN interacting serine and arginine rich protein.	Serine and arginine rich splicing factor 4.	0.659
PNISR	SRSF5	ENSMLUP00000004760	ENSMLUP00000010873	PNN interacting serine and arginine rich protein.	Serine and arginine rich splicing factor 5.	0.735
PNISR	SRSF9	ENSMLUP00000004760	ENSMLUP00000009421	PNN interacting serine and arginine rich protein.	Serine and arginine rich splicing factor 9.	0.495
RBM39	PNISR	ENSMLUP00000002729	ENSMLUP00000004760	RNA binding motif protein 39.	PNN interacting serine and arginine rich protein.	0.834
RBM39	SRRM1	ENSMLUP00000002729	ENSMLUP00000005712	RNA binding motif protein 39.	Serine and arginine repetitive matrix 1.	0.974
RBM39	SRSF1	ENSMLUP00000002729	ENSMLUP00000010054	RNA binding motif protein 39.	Uncharacterized protein.	0.483
RBM39	SRSF11	ENSMLUP00000002729	ENSMLUP00000005676	RNA binding motif protein 39.	RRM domain-containing protein.	0.922
RBM39	SRSF2	ENSMLUP00000002729	ENSMLUP00000022051	RNA binding motif protein 39.	RRM domain-containing protein.	0.595
RBM39	SRSF4	ENSMLUP00000002729	ENSMLUP00000013443	RNA binding motif protein 39.	Serine and arginine rich splicing factor 4.	0.552
RBM39	SRSF5	ENSMLUP00000002729	ENSMLUP00000010873	RNA binding motif protein 39.	Serine and arginine rich splicing factor 5.	0.847