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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG8SMG8 nonsense mediated mRNA decay factor. (993 aa)    
Predicted Functional Partners:
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.999
SMG9
SMG9 nonsense mediated mRNA decay factor.
    
 0.999
G1P265_MYOLU
Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.
   
 0.920
LOC102437790
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.920
PRKDC
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
   
 0.918
PNRC2
Proline rich nuclear receptor coactivator 2.
     
 0.885
SMG5
SMG5 nonsense mediated mRNA decay factor.
     
 0.882
SMG7
SMG7 nonsense mediated mRNA decay factor.
     
 0.880
SMG6
SMG6 nonsense mediated mRNA decay factor.
     
 0.854
DCP1A
Decapping mRNA 1A.
   
 
 0.847
Your Current Organism:
Myotis lucifugus
NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.