G1PYI8_MYOLU protein (Myotis lucifugus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G1PYI8_MYOLU

RNA_pol_Rpb5_N domain-containing protein. (162 aa)

Predicted Functional Partners:

LEO1

0.999

TWISTNB

0.999

POLR2F

0.999

POLR1C

0.999

G1QDM7_MYOLU

0.999

POLR2H

0.999

POLR1B

0.998

POLR2D

0.998

POLR2A

0.998

POLR2J

0.998

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G1PYI8_MYOLU	G1QDM7_MYOLU	ENSMLUP00000016520	ENSMLUP00000021810	RNA_pol_Rpb5_N domain-containing protein.	Uncharacterized protein.	0.999
G1PYI8_MYOLU	LEO1	ENSMLUP00000016520	ENSMLUP00000003626	RNA_pol_Rpb5_N domain-containing protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
G1PYI8_MYOLU	POLR1B	ENSMLUP00000016520	ENSMLUP00000004476	RNA_pol_Rpb5_N domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
G1PYI8_MYOLU	POLR1C	ENSMLUP00000016520	ENSMLUP00000016194	RNA_pol_Rpb5_N domain-containing protein.	RNA polymerase I and III subunit C.	0.999
G1PYI8_MYOLU	POLR2A	ENSMLUP00000016520	ENSMLUP00000008299	RNA_pol_Rpb5_N domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
G1PYI8_MYOLU	POLR2D	ENSMLUP00000016520	ENSMLUP00000006259	RNA_pol_Rpb5_N domain-containing protein.	RNA polymerase II subunit D.	0.998
G1PYI8_MYOLU	POLR2F	ENSMLUP00000016520	ENSMLUP00000013020	RNA_pol_Rpb5_N domain-containing protein.	Uncharacterized protein.	0.999
G1PYI8_MYOLU	POLR2H	ENSMLUP00000016520	ENSMLUP00000022373	RNA_pol_Rpb5_N domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
G1PYI8_MYOLU	POLR2J	ENSMLUP00000016520	ENSMLUP00000009533	RNA_pol_Rpb5_N domain-containing protein.	RNA polymerase II subunit J.	0.998
G1PYI8_MYOLU	TWISTNB	ENSMLUP00000016520	ENSMLUP00000008065	RNA_pol_Rpb5_N domain-containing protein.	TWIST neighbor.	0.999
G1QDM7_MYOLU	G1PYI8_MYOLU	ENSMLUP00000021810	ENSMLUP00000016520	Uncharacterized protein.	RNA_pol_Rpb5_N domain-containing protein.	0.999
G1QDM7_MYOLU	LEO1	ENSMLUP00000021810	ENSMLUP00000003626	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
G1QDM7_MYOLU	POLR1B	ENSMLUP00000021810	ENSMLUP00000004476	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
G1QDM7_MYOLU	POLR1C	ENSMLUP00000021810	ENSMLUP00000016194	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.999
G1QDM7_MYOLU	POLR2A	ENSMLUP00000021810	ENSMLUP00000008299	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
G1QDM7_MYOLU	POLR2D	ENSMLUP00000021810	ENSMLUP00000006259	Uncharacterized protein.	RNA polymerase II subunit D.	0.998
G1QDM7_MYOLU	POLR2H	ENSMLUP00000021810	ENSMLUP00000022373	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
G1QDM7_MYOLU	POLR2J	ENSMLUP00000021810	ENSMLUP00000009533	Uncharacterized protein.	RNA polymerase II subunit J.	0.999
G1QDM7_MYOLU	TWISTNB	ENSMLUP00000021810	ENSMLUP00000008065	Uncharacterized protein.	TWIST neighbor.	0.998
LEO1	G1PYI8_MYOLU	ENSMLUP00000003626	ENSMLUP00000016520	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA_pol_Rpb5_N domain-containing protein.	0.999