ENSMLUP00000018160 protein (Myotis lucifugus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSMLUP00000018160

annotation not available (136 aa)

Predicted Functional Partners:

H2AX

0.911

KDM6A

0.898

KDM6B

0.898

LOC106698231

0.896

ENSMLUP00000017704

0.896

ENSMLUP00000020187

0.896

LOC102424579

0.896

ENSMLUP00000022553

0.896

SETD2

0.860

ARID4A

0.859

Your Current Organism:

Myotis lucifugus

NCBI taxonomy Id: 59463
Other names: M. lucifugus, little brown bat

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ENSMLUP00000017704	ENSMLUP00000011258	ENSMLUP00000017704	AT-rich interaction domain 4A.	annotation not available	0.928
ARID4A	ENSMLUP00000018160	ENSMLUP00000011258	ENSMLUP00000018160	AT-rich interaction domain 4A.	annotation not available	0.859
ARID4A	ENSMLUP00000020187	ENSMLUP00000011258	ENSMLUP00000020187	AT-rich interaction domain 4A.	annotation not available	0.928
ARID4A	ENSMLUP00000022553	ENSMLUP00000011258	ENSMLUP00000022553	AT-rich interaction domain 4A.	annotation not available	0.928
ARID4A	H2AX	ENSMLUP00000011258	ENSMLUP00000004383	AT-rich interaction domain 4A.	Histone H2A; Belongs to the histone H2A family.	0.690
ARID4A	KDM6A	ENSMLUP00000011258	ENSMLUP00000001587	AT-rich interaction domain 4A.	Lysine demethylase 6A.	0.848
ARID4A	KDM6B	ENSMLUP00000011258	ENSMLUP00000013317	AT-rich interaction domain 4A.	Lysine demethylase 6B.	0.840
ARID4A	LOC102424579	ENSMLUP00000011258	ENSMLUP00000022116	AT-rich interaction domain 4A.	annotation not available	0.928
ARID4A	LOC106698231	ENSMLUP00000011258	ENSMLUP00000000054	AT-rich interaction domain 4A.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.928
ARID4A	SETD2	ENSMLUP00000011258	ENSMLUP00000009203	AT-rich interaction domain 4A.	SET domain containing 2, histone lysine methyltransferase.	0.676
ENSMLUP00000017704	ARID4A	ENSMLUP00000017704	ENSMLUP00000011258	annotation not available	AT-rich interaction domain 4A.	0.928
ENSMLUP00000017704	ENSMLUP00000018160	ENSMLUP00000017704	ENSMLUP00000018160	annotation not available	annotation not available	0.896
ENSMLUP00000017704	H2AX	ENSMLUP00000017704	ENSMLUP00000004383	annotation not available	Histone H2A; Belongs to the histone H2A family.	0.922
ENSMLUP00000017704	KDM6A	ENSMLUP00000017704	ENSMLUP00000001587	annotation not available	Lysine demethylase 6A.	0.845
ENSMLUP00000017704	KDM6B	ENSMLUP00000017704	ENSMLUP00000013317	annotation not available	Lysine demethylase 6B.	0.845
ENSMLUP00000017704	SETD2	ENSMLUP00000017704	ENSMLUP00000009203	annotation not available	SET domain containing 2, histone lysine methyltransferase.	0.854
ENSMLUP00000018160	ARID4A	ENSMLUP00000018160	ENSMLUP00000011258	annotation not available	AT-rich interaction domain 4A.	0.859
ENSMLUP00000018160	ENSMLUP00000017704	ENSMLUP00000018160	ENSMLUP00000017704	annotation not available	annotation not available	0.896
ENSMLUP00000018160	ENSMLUP00000020187	ENSMLUP00000018160	ENSMLUP00000020187	annotation not available	annotation not available	0.896
ENSMLUP00000018160	ENSMLUP00000022553	ENSMLUP00000018160	ENSMLUP00000022553	annotation not available	annotation not available	0.896