KLU07589.1 protein (Rhodopirellula islandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KLU07589.1

Hypothetical protein. (51 aa)

Predicted Functional Partners:

KLU07591.1

0.655

KLU07592.1

0.655

KLU07593.1

0.655

pstB

0.655

KLU07590.1

0.572

KLU07595.1

0.478

Your Current Organism:

Rhodopirellula islandica

NCBI taxonomy Id: 595434
Other names: DSM 24040, JCM 17612, R. islandica, Rhodopirellula sp. K833, strain K833

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLU07589.1	KLU07590.1	RISK_000667	RISK_000668	Hypothetical protein.	Hypothetical protein.	0.572
KLU07589.1	KLU07591.1	RISK_000667	RISK_000669	Hypothetical protein.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	0.655
KLU07589.1	KLU07592.1	RISK_000667	RISK_000670	Hypothetical protein.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.655
KLU07589.1	KLU07593.1	RISK_000667	RISK_000671	Hypothetical protein.	Phosphate transport system permease protein PstA.	0.655
KLU07589.1	KLU07595.1	RISK_000667	RISK_000673	Hypothetical protein.	Hypothetical protein.	0.478
KLU07589.1	pstB	RISK_000667	RISK_000672	Hypothetical protein.	Phosphate transport ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.655
KLU07590.1	KLU07589.1	RISK_000668	RISK_000667	Hypothetical protein.	Hypothetical protein.	0.572
KLU07590.1	KLU07591.1	RISK_000668	RISK_000669	Hypothetical protein.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	0.491
KLU07590.1	KLU07592.1	RISK_000668	RISK_000670	Hypothetical protein.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.491
KLU07590.1	KLU07593.1	RISK_000668	RISK_000671	Hypothetical protein.	Phosphate transport system permease protein PstA.	0.491
KLU07590.1	pstB	RISK_000668	RISK_000672	Hypothetical protein.	Phosphate transport ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.491
KLU07591.1	KLU07589.1	RISK_000669	RISK_000667	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	Hypothetical protein.	0.655
KLU07591.1	KLU07590.1	RISK_000669	RISK_000668	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	Hypothetical protein.	0.491
KLU07591.1	KLU07592.1	RISK_000669	RISK_000670	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.990
KLU07591.1	KLU07593.1	RISK_000669	RISK_000671	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	Phosphate transport system permease protein PstA.	0.988
KLU07591.1	KLU07595.1	RISK_000669	RISK_000673	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	Hypothetical protein.	0.607
KLU07591.1	pstB	RISK_000669	RISK_000672	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	Phosphate transport ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.989
KLU07592.1	KLU07589.1	RISK_000670	RISK_000667	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Hypothetical protein.	0.655
KLU07592.1	KLU07590.1	RISK_000670	RISK_000668	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Hypothetical protein.	0.491
KLU07592.1	KLU07591.1	RISK_000670	RISK_000669	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.	0.990