KLU05003.1 protein (Rhodopirellula islandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KLU05003.1

Putative protein-transmembrane prediction. (1024 aa)

Predicted Functional Partners:

KLU05809.1

0.988

KLU05988.1

0.976

KLU05004.1

0.946

KLU04352.1

0.881

KLU02356.1

0.772

KLU05546.1

0.771

KLU04050.1

0.771

KLU01837.1

0.771

KLU06859.1

0.769

KLU02050.1

0.769

Your Current Organism:

Rhodopirellula islandica

NCBI taxonomy Id: 595434
Other names: DSM 24040, JCM 17612, R. islandica, Rhodopirellula sp. K833, strain K833

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLU01837.1	KLU05003.1	RISK_006021	RISK_002996	Putative protein-putative related to sulfatases.	Putative protein-transmembrane prediction.	0.771
KLU02050.1	KLU05003.1	RISK_005876	RISK_002996	Hypothetical protein.	Putative protein-transmembrane prediction.	0.769
KLU02356.1	KLU05003.1	RISK_005422	RISK_002996	Putative protein-putative related to sulfatases.	Putative protein-transmembrane prediction.	0.772
KLU04050.1	KLU05003.1	RISK_004019	RISK_002996	Putative protein-putative related to sulfatases.	Putative protein-transmembrane prediction.	0.771
KLU04352.1	KLU05003.1	RISK_003406	RISK_002996	Molybdopterin oxidoreductase, iron-sulfur binding subunit.	Putative protein-transmembrane prediction.	0.881
KLU04352.1	KLU05809.1	RISK_003406	RISK_002441	Molybdopterin oxidoreductase, iron-sulfur binding subunit.	Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.	0.938
KLU04352.1	KLU05988.1	RISK_003406	RISK_001839	Molybdopterin oxidoreductase, iron-sulfur binding subunit.	Cytochrome c oxidase polypeptide II.	0.792
KLU05003.1	KLU01837.1	RISK_002996	RISK_006021	Putative protein-transmembrane prediction.	Putative protein-putative related to sulfatases.	0.771
KLU05003.1	KLU02050.1	RISK_002996	RISK_005876	Putative protein-transmembrane prediction.	Hypothetical protein.	0.769
KLU05003.1	KLU02356.1	RISK_002996	RISK_005422	Putative protein-transmembrane prediction.	Putative protein-putative related to sulfatases.	0.772
KLU05003.1	KLU04050.1	RISK_002996	RISK_004019	Putative protein-transmembrane prediction.	Putative protein-putative related to sulfatases.	0.771
KLU05003.1	KLU04352.1	RISK_002996	RISK_003406	Putative protein-transmembrane prediction.	Molybdopterin oxidoreductase, iron-sulfur binding subunit.	0.881
KLU05003.1	KLU05004.1	RISK_002996	RISK_002997	Putative protein-transmembrane prediction.	Putative protein-putative related to sulfatases.	0.946
KLU05003.1	KLU05546.1	RISK_002996	RISK_002178	Putative protein-transmembrane prediction.	Putative protein-putative related to sulfatases.	0.771
KLU05003.1	KLU05809.1	RISK_002996	RISK_002441	Putative protein-transmembrane prediction.	Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.	0.988
KLU05003.1	KLU05988.1	RISK_002996	RISK_001839	Putative protein-transmembrane prediction.	Cytochrome c oxidase polypeptide II.	0.976
KLU05003.1	KLU06859.1	RISK_002996	RISK_001173	Putative protein-transmembrane prediction.	Putative protein-putative related to sulfatases.	0.769
KLU05004.1	KLU05003.1	RISK_002997	RISK_002996	Putative protein-putative related to sulfatases.	Putative protein-transmembrane prediction.	0.946
KLU05546.1	KLU05003.1	RISK_002178	RISK_002996	Putative protein-putative related to sulfatases.	Putative protein-transmembrane prediction.	0.771
KLU05809.1	KLU04352.1	RISK_002441	RISK_003406	Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.	Molybdopterin oxidoreductase, iron-sulfur binding subunit.	0.938