Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KLU02555.1 | KLU04071.1 | RISK_005621 | RISK_003657 | RNA-binding protein. | ATP-dependent helicase HrpB. | 0.728 |
KLU02896.1 | KLU04071.1 | RISK_005192 | RISK_003657 | SSU ribosomal protein S1p. | ATP-dependent helicase HrpB. | 0.853 |
KLU02896.1 | KLU04684.1 | RISK_005192 | RISK_003306 | SSU ribosomal protein S1p. | SSU ribosomal protein S1p. | 0.929 |
KLU02896.1 | KLU07009.1 | RISK_005192 | RISK_000810 | SSU ribosomal protein S1p. | Ribonuclease D. | 0.918 |
KLU02896.1 | rph | RISK_005192 | RISK_000786 | SSU ribosomal protein S1p. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.817 |
KLU02896.1 | rpsD | RISK_005192 | RISK_003120 | SSU ribosomal protein S1p. | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.996 |
KLU02896.1 | rpsE | RISK_005192 | RISK_000243 | SSU ribosomal protein S1p. | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.995 |
KLU02896.1 | rpsK | RISK_005192 | RISK_003432 | SSU ribosomal protein S1p. | SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.996 |
KLU02896.1 | rtcA | RISK_005192 | RISK_000075 | SSU ribosomal protein S1p. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.922 |
KLU04071.1 | KLU02555.1 | RISK_003657 | RISK_005621 | ATP-dependent helicase HrpB. | RNA-binding protein. | 0.728 |
KLU04071.1 | KLU02896.1 | RISK_003657 | RISK_005192 | ATP-dependent helicase HrpB. | SSU ribosomal protein S1p. | 0.853 |
KLU04071.1 | KLU04072.1 | RISK_003657 | RISK_003658 | ATP-dependent helicase HrpB. | Acetyl xylan esterase. | 0.780 |
KLU04071.1 | KLU04684.1 | RISK_003657 | RISK_003306 | ATP-dependent helicase HrpB. | SSU ribosomal protein S1p. | 0.832 |
KLU04071.1 | KLU07009.1 | RISK_003657 | RISK_000810 | ATP-dependent helicase HrpB. | Ribonuclease D. | 0.920 |
KLU04071.1 | rph | RISK_003657 | RISK_000786 | ATP-dependent helicase HrpB. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.804 |
KLU04071.1 | rpsD | RISK_003657 | RISK_003120 | ATP-dependent helicase HrpB. | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.874 |
KLU04071.1 | rpsE | RISK_003657 | RISK_000243 | ATP-dependent helicase HrpB. | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.805 |
KLU04071.1 | rpsK | RISK_003657 | RISK_003432 | ATP-dependent helicase HrpB. | SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.833 |
KLU04071.1 | rtcA | RISK_003657 | RISK_000075 | ATP-dependent helicase HrpB. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.860 |
KLU04072.1 | KLU04071.1 | RISK_003658 | RISK_003657 | Acetyl xylan esterase. | ATP-dependent helicase HrpB. | 0.780 |
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