Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EMI45623.1Hypothetical protein. (435 aa)    
Predicted Functional Partners:
EMI45624.1
Bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase.
 
   
 0.903
EMI45625.1
Methylenetetrahydrofolate dehydrogenase (NADP(+)).
 
   
 0.870
ffsA
Formyltransferase/hydrolase complex Fhc subunit D; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
  
  0.859
EMI46029.1
triphosphoribosyl-dephospho-CoA protein.
 
   
 0.832
EMI46378.1
Formylmethanofuran dehydrogenase subunit C domain protein.
 
     0.800
EMI46380.1
Amidohydrolase 3.
 
     0.800
EMI43001.1
Beta-ribofuranosylaminobenzene 5'-phosphate synthase family.
 
     0.800
mch
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.799
EMI43002.1
Protein containing DUF447.
 
     0.799
EMI44384.1
Histidine biosynthesis protein; Belongs to the HisA/HisF family.
 
     0.787
Your Current Organism:
Rhodopirellula sp. SWK7
NCBI taxonomy Id: 595460
Other names: R. sp. SWK7
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