STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMI45093.1ATPase associated with various cellular activities AAA_5. (395 aa)    
Predicted Functional Partners:
EMI45090.1
Cyclic nucleotide-binding protein.
       0.801
EMI45091.1
Hypothetical protein.
       0.801
EMI45092.1
Hypothetical protein.
       0.773
EMI45089.1
Glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
    0.738
EMI45094.1
Putative secreted protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
 
     0.561
EMI45360.1
RNA-directed DNA polymerase (Reverse transcriptase).
  
     0.554
EMI46443.1
Phytanoyl-CoA dioxygenase.
  
     0.520
EMI44209.1
RedB.
  
     0.511
rtcB
Uncharacterized protein family UPF0027; Belongs to the RtcB family.
  
     0.510
rtcA
RNA 3'-terminal phosphate cyclase, subgroup; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
  
     0.510
Your Current Organism:
Rhodopirellula sp. SWK7
NCBI taxonomy Id: 595460
Other names: R. sp. SWK7
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.