STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMI41470.1FecR protein domain protein. (569 aa)    
Predicted Functional Partners:
EMI41469.1
Planctomycete cytochrome C domain protein.
 
     0.904
EMI41471.1
RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.838
EMI41468.1
Protein containing DUF1501.
 
     0.823
EMI46904.1
RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.763
EMI46668.1
ECF-like sigma factor SigE.
  
   0.758
EMI47040.1
Secreted protein.
  
     0.751
EMI44009.1
Hypothetical protein.
  
     0.741
EMI46730.1
RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.738
EMI43048.1
Jellyroll fold domain-containing protein.
  
     0.735
EMI47080.1
Extracytoplasmic function alternative sigma factor.
  
   0.733
Your Current Organism:
Rhodopirellula sp. SWK7
NCBI taxonomy Id: 595460
Other names: R. sp. SWK7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.