STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0197TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: pmy:Pmen_0095 hypothetical protein. (585 aa)    
Predicted Functional Partners:
Tola_0195
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: pmy:Pmen_0091 hypothetical protein.
 
  
 0.983
Tola_0194
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: pmy:Pmen_0090 hypothetical protein.
 
  
 0.977
Tola_0196
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: pen:PSEEN0525 hypothetical protein.
 
  
 0.977
Tola_0198
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: pag:PLES_36661 hypothetical protein.
 
  
 0.976
Tola_0204
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: pag:PLES_36601 hypothetical protein.
 
 
 0.974
Tola_0193
TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: pau:PA14_43050 hypothetical protein.
 
  
 0.958
Tola_0203
TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: vsa:VSAL_I1116 putative type VI secretion protein VasD.
 
  
 0.945
Tola_0205
TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: pau:PA14_42910 hypothetical protein.
 
  
 0.942
Tola_0199
Type VI secretion ATPase, ClpV1 family; KEGG: pau:PA14_42980 putative ClpA/B-type protease; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
 
  
 0.936
Tola_0202
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: pst:PSPTO_5422 FHA domain-containing protein.
 
  
 0.918
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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