Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tola_0239 | Tola_0240 | Tola_0239 | Tola_0240 | PFAM: Methyltransferase type 12; Spermine synthase; KEGG: aha:AHA_0280 hypothetical protein. | PFAM: AsmA family protein; KEGG: asa:ASA_4114 hypothetical protein. | 0.773 |
Tola_0239 | recG | Tola_0239 | Tola_0241 | PFAM: Methyltransferase type 12; Spermine synthase; KEGG: aha:AHA_0280 hypothetical protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.620 |
Tola_0240 | Tola_0239 | Tola_0240 | Tola_0239 | PFAM: AsmA family protein; KEGG: asa:ASA_4114 hypothetical protein. | PFAM: Methyltransferase type 12; Spermine synthase; KEGG: aha:AHA_0280 hypothetical protein. | 0.773 |
Tola_0240 | recG | Tola_0240 | Tola_0241 | PFAM: AsmA family protein; KEGG: asa:ASA_4114 hypothetical protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.679 |
recG | Tola_0239 | Tola_0241 | Tola_0239 | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | PFAM: Methyltransferase type 12; Spermine synthase; KEGG: aha:AHA_0280 hypothetical protein. | 0.620 |
recG | Tola_0240 | Tola_0241 | Tola_0240 | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | PFAM: AsmA family protein; KEGG: asa:ASA_4114 hypothetical protein. | 0.679 |