STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0274PFAM: glycosyl transferase family 39; KEGG: pat:Patl_3674 glycosyl transferase family protein. (571 aa)    
Predicted Functional Partners:
Tola_0272
PFAM: glycosyl transferase family 2; KEGG: pst:PSPTO_5587 glycosyl transferase, group 2 family protein.
 
  
 0.963
Tola_0273
PFAM: lipid A biosynthesis domain protein; KEGG: smt:Smal_3961 lipid A biosynthesis domain protein.
 
     0.902
Tola_0275
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: esa:ESA_01535 hypothetical protein.
 
  
 0.858
Tola_1122
PFAM: glycosyl transferase family 2; KEGG: aha:AHA_1218 bactoprenol glucosyl transferase.
 
  
 0.730
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.484
Tola_0271
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: aha:AHA_4241 ThiF domain-containing protein.
       0.440
Tola_1966
KEGG: cak:Caul_3707 urate catabolism protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.
  
  
 0.419
Tola_2856
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: shm:Shewmr7_3979 UDP-glucuronate 5'-epimerase.
 
  
 0.408
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.