STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0426PFAM: protein of unknown function UPF0102; KEGG: aha:AHA_3896 hypothetical protein; Belongs to the UPF0102 family. (124 aa)    
Predicted Functional Partners:
Tola_0425
KEGG: asa:ASA_0341 phosphoheptose isomerase.
  
  
 0.824
Tola_0427
PFAM: LppC family lipoprotein; KEGG: asa:ASA_0343 LppC family lipoprotein.
     
 0.818
Tola_0424
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aha:AHA_3898 secreted protein.
     
 0.777
Tola_0511
KEGG: aha:AHA_0298 ComF family protein.
 
    0.725
Tola_3059
Mg chelatase, subunit ChlI; KEGG: asa:ASA_0118 ComM-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.681
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.603
Tola_0155
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: aha:AHA_0260 DNA protecting protein DprA.
 
    0.595
Tola_2236
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: aha:AHA_2779 DNA internalization-related competence protein ComEC/Rec2.
 
    0.472
Tola_2839
KEGG: dvl:Dvul_2249 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein.
   
    0.442
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
     0.417
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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