STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0500TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; KEGG: ypy:YPK_0233 formate/nitrite transporter. (270 aa)    
Predicted Functional Partners:
Tola_0501
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: ypm:YP_0162 nitrite reductase small subunit.
  
  
 0.865
Tola_0502
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: asa:ASA_0196 nitrite reductase (NAD(P)H), large subunit.
  
  
 0.802
Tola_0503
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: slo:Shew_1070 oxidoreductase FAD-binding subunit.
  
  
 0.790
Tola_3009
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.694
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
 
   
 0.665
Tola_1775
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; molydopterin dinucleotide-binding region; KEGG: aha:AHA_3414 nitrate reductase.
  
  
 0.540
Tola_2176
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: aha:AHA_2616 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.470
Tola_0499
Hypothetical protein.
       0.444
Tola_1763
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: vvy:VVA0947 ferredoxin subunit of nitrite reductase.
  
  
 0.431
Tola_0597
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: aha:AHA_2649 FAD linked oxidase.
     
 0.430
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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