STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0511KEGG: aha:AHA_0298 ComF family protein. (236 aa)    
Predicted Functional Partners:
Tola_0155
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: aha:AHA_0260 DNA protecting protein DprA.
 
 
 0.907
Tola_2236
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: aha:AHA_2779 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.879
Tola_3059
Mg chelatase, subunit ChlI; KEGG: asa:ASA_0118 ComM-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.854
Tola_0183
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: aha:AHA_0160 DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.729
Tola_0426
PFAM: protein of unknown function UPF0102; KEGG: aha:AHA_3896 hypothetical protein; Belongs to the UPF0102 family.
 
    0.725
Tola_1377
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: asa:ASA_2703 bifunctional chorismate mutase/prephenate dehydrogenase.
  
  
 0.709
Tola_1142
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: pmr:PMI2440 plasmid-related DNA repair protein; Belongs to the UPF0758 family.
 
    0.681
Tola_2446
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: bpt:Bpet1083 DNA repair protein RadC-like protein; Belongs to the UPF0758 family.
 
    0.665
nfuA
IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
     
 0.645
Tola_0617
Multi-sensor hybrid histidine kinase; KEGG: aha:AHA_0905 aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAS domain containing protein.
  
  
 0.585
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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