STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0512TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dar:Daro_0054 ammonium transporter. (493 aa)    
Predicted Functional Partners:
Tola_2560
PFAM: nitrogen regulatory protein P-II; KEGG: asa:ASA_0649 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.991
Tola_2920
PFAM: nitrogen regulatory protein P-II; KEGG: asa:ASA_0695 nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.989
Tola_1436
KEGG: asa:ASA_0073 hypothetical protein.
  
 
 0.780
Tola_0487
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: dar:Daro_0217 glutamate synthase (NADH) large subunit.
 
  
 0.737
Tola_0457
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: aha:AHA_0275 nitrogen regulation protein NR(II); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
 
 
 0.718
Tola_0511
KEGG: aha:AHA_0298 ComF family protein.
       0.553
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
  
  
 0.530
Tola_0459
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: aha:AHA_0277 glutamine synthetase, type I.
  
  
 0.473
Tola_0604
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: eca:ECA2937 femo cofactor biosynthesis protein.
  
  
 0.463
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.449
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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