STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0539KEGG: pin:Ping_0478 prepilin peptidase dependent protein D. (147 aa)    
Predicted Functional Partners:
Tola_0537
PFAM: type II secretion system protein; KEGG: aha:AHA_3870 type 4 fimbrial assembly protein PilC.
 
   
 0.825
Tola_0536
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.796
Tola_0538
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: aha:AHA_3869 type IV-A pilus assembly ATPase PilB.
 
  
 0.781
Tola_2627
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: aha:AHA_3190 type IV pilus secretin PilQ.
 
   
 0.762
Tola_2951
KEGG: cps:CPS_1217 type IV pilus biogenesis protein PilE.
 
   
 0.696
Tola_0966
Twitching motility protein; KEGG: asa:ASA_3632 type IV pilus protein TapT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.668
Tola_2623
TIGRFAM: type IV pilus assembly protein PilM; KEGG: aha:AHA_3194 type IV pilus biogenesis protein PilM.
 
   
 0.663
Tola_2625
PFAM: Pilus assembly protein PilO; KEGG: aha:AHA_3192 type IV pilus biogenesis protein PilO.
  
   
 0.586
Tola_0967
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: asa:ASA_3633 type IV pilus protein TapU.
  
   
 0.567
Tola_2624
PFAM: Fimbrial assembly family protein; KEGG: aha:AHA_3193 type IV pilus biogenesis PilN.
  
   
 0.546
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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