STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0555PFAM: cytochrome B561; KEGG: dar:Daro_2794 cytochrome b561. (180 aa)    
Predicted Functional Partners:
Tola_0556
PFAM: YceI family protein; KEGG: dar:Daro_2795 YceI; Belongs to the UPF0312 family.
 
  
 0.953
Tola_0557
PFAM: YceI family protein; KEGG: cvi:CV_3276 hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.917
Tola_0554
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dar:Daro_2792 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.538
Tola_0558
PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0758 pirin domain protein; Belongs to the pirin family.
     
 0.494
trpF
Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: aha:AHA_2926 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
     
 0.454
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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