STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0563PFAM: aminotransferase class IV; KEGG: eca:ECA3117 D-alanine aminotransferase. (286 aa)    
Predicted Functional Partners:
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: aha:AHA_2194 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.922
Tola_0560
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.915
Tola_2726
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.915
ddl
D-alanine/D-alanine ligase; Cell wall formation.
   
 
 0.914
Tola_1467
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: vha:VIBHAR_01890 aromatic amino acid aminotransferase.
   
 
 0.909
Tola_1524
Aromatic-amino-acid transaminase; PFAM: aminotransferase class I and II; KEGG: aha:AHA_0624 aromatic amino acid aminotransferase.
   
 
 0.909
Tola_0562
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA3116 putative mandelate racemase/muconate lactonizing enzyme.
 
     0.808
Tola_0561
PFAM: protein of unknown function DUF1611; KEGG: hypothetical protein.
 
     0.748
Tola_2189
TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: asa:ASA_2051 4-amino-4-deoxychorismate lyase.
  
     0.628
Tola_0129
Aspartate kinase; KEGG: aha:AHA_0590 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; aspartate/glutamate/uridylate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.615
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.