STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0644PFAM: glycosyl transferase family 2; KEGG: shm:Shewmr7_0420 glycosyl transferase, family 2. (443 aa)    
Predicted Functional Partners:
Tola_0643
KEGG: sbn:Sbal195_0447 hypothetical protein.
 
  
 0.952
Tola_0645
KEGG: sbn:Sbal195_0449 hypothetical protein.
 
  
 0.939
Tola_1147
KEGG: sbn:Sbal195_0447 hypothetical protein.
 
  
 0.799
Tola_1149
KEGG: asa:ASA_0611 hypothetical protein.
 
  
 0.724
Tola_0134
KEGG: azo:azo0531 hypothetical protein.
  
 
 0.683
Tola_0646
KEGG: cvi:CV_0096 hypothetical protein.
       0.622
Tola_2839
KEGG: dvl:Dvul_2249 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein.
 
  
 0.611
Tola_1966
KEGG: cak:Caul_3707 urate catabolism protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.
  
  
 0.565
Tola_0642
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cvi:CV_1724 phosphoglycerate dehydrogenase.
  
    0.533
Tola_0617
Multi-sensor hybrid histidine kinase; KEGG: aha:AHA_0905 aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAS domain containing protein.
  
 
 0.515
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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