STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0705PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: mms:mma_0801 RNA-directed DNA polymerase. (343 aa)    
Predicted Functional Partners:
Tola_0704
PFAM: transposase IS3/IS911 family protein; KEGG: abo:ABO_1787 transposase, OrfA.
     
 0.609
Tola_1601
KEGG: scl:sce6902 polyA polymerase related protein.
  
     0.537
Tola_2046
KEGG: ppd:Ppro_2105 polysaccharide biosynthesis protein.
   
    0.465
Tola_0707
KEGG: mms:mma_0803 hypothetical protein.
       0.447
Tola_0706
Hypothetical protein.
       0.431
Tola_0703
PFAM: Integrase catalytic region; KEGG: vsp:VS_1873 transposase (orfB) of insertion sequence ISVisp1; IS3 family subgroup IS3.
       0.418
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.