STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0785PFAM: protein of unknown function DUF785; KEGG: asa:ASA_2848 ATP-dependent Zn protease. (341 aa)    
Predicted Functional Partners:
Tola_0784
KEGG: aha:AHA_1516 gonadoliberin III-related protein.
 
    0.954
Tola_0783
TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: asa:ASA_2850 hypothetical protein.
 
     0.952
cmoB
Methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
     0.693
cmoA
Methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
 
     0.684
Tola_0427
PFAM: LppC family lipoprotein; KEGG: asa:ASA_0343 LppC family lipoprotein.
  
   
 0.558
Tola_2148
KEGG: asa:ASA_2560 hypothetical protein.
  
     0.441
Tola_0788
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aha:AHA_3240 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
       0.412
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.