STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0908PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; MLTD_N domain protein; SMART: Peptidoglycan-binding LysM; KEGG: asa:ASA_2791 lytic murein transglycosylase. (469 aa)    
Predicted Functional Partners:
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
       0.619
Tola_0955
KEGG: saz:Sama_1417 hypothetical protein.
  
  
 0.592
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.588
Tola_0907
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: asa:ASA_3247 short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.577
Tola_2622
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: asa:ASA_1119 penicillin-binding protein 1A.
 
  
 0.564
Tola_0910
PFAM: Methyltransferase type 11; KEGG: aha:AHA_1569 methyltransferase.
     
 0.543
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
 
  
 0.541
Tola_1133
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: aha:AHA_1280 major outer membrane protein OmpAII; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
 
 0.540
trpF
Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: aha:AHA_2926 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
  
   0.536
Tola_2592
PFAM: Peptidase M23; KEGG: aha:AHA_3724 metalloprotease opacity-associated protein A family.
 
  
 0.530
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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