STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0966Twitching motility protein; KEGG: asa:ASA_3632 type IV pilus protein TapT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (345 aa)    
Predicted Functional Partners:
Tola_0536
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.858
Tola_2623
TIGRFAM: type IV pilus assembly protein PilM; KEGG: aha:AHA_3194 type IV pilus biogenesis protein PilM.
 
   
 0.836
Tola_0537
PFAM: type II secretion system protein; KEGG: aha:AHA_3870 type 4 fimbrial assembly protein PilC.
 
  
 0.827
Tola_0365
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: aha:AHA_0571 general secretion pathway protein F.
 
  
 0.814
Tola_0967
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: asa:ASA_3633 type IV pilus protein TapU.
 
  
0.812
Tola_2627
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: aha:AHA_3190 type IV pilus secretin PilQ.
 
   
 0.746
Tola_0539
KEGG: pin:Ping_0478 prepilin peptidase dependent protein D.
 
   
 0.668
Tola_2625
PFAM: Pilus assembly protein PilO; KEGG: aha:AHA_3192 type IV pilus biogenesis protein PilO.
 
  
 0.626
Tola_0962
PFAM: protein of unknown function DUF167; KEGG: vsp:VS_2686 hypothetical protein; Belongs to the UPF0235 family.
       0.615
Tola_0963
PFAM: protein of unknown function YGGT; KEGG: aha:AHA_3662 integral membrane protein.
       0.615
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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