STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0979PFAM: DGC domain protein; KEGG: tmz:Tmz1t_0653 DGC domain protein. (135 aa)    
Predicted Functional Partners:
Tola_2024
PFAM: peptidase U32; KEGG: aha:AHA_1741 collagenase.
 
    0.732
Tola_0980
KEGG: bsu:BSU05380 hypothetical protein.
       0.631
Tola_2022
PFAM: Sterol-binding domain protein; KEGG: vvy:VV2689 putative lipid carrier protein.
 
    0.561
Tola_0981
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bvi:Bcep1808_5074 MarR family transcriptional regulator.
 
    0.530
Tola_2023
PFAM: peptidase U32; KEGG: asa:ASA_2617 putative protease.
 
    0.526
Tola_1841
Protein of unknown function DUF542 ScdA domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
  
     0.496
Tola_1825
PFAM: beta-lactamase domain protein; Rubredoxin-type Fe(Cys)4 protein; flavodoxin/nitric oxide synthase; KEGG: eba:ebA539 anaerobic nitric oxide reductase flavorubredoxin.
   
  
 0.486
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.