STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1093Putative sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; KEGG: asa:ASA_2879 methyl-accepting chemotaxis protein. (248 aa)    
Predicted Functional Partners:
Tola_2043
PFAM: O-antigen polymerase; KEGG: aha:AHA_2873 lipid A core - O-antigen ligase.
  
     0.734
Tola_0492
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: asa:ASA_3179 hypothetical protein.
  
     0.730
Tola_0483
PFAM: porin Gram-negative type; KEGG: aha:AHA_0463 hypothetical protein.
  
     0.715
Tola_0896
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: asa:ASA_1184 hypothetical protein.
  
     0.707
Tola_2615
PFAM: Sporulation domain protein; KEGG: asa:ASA_1127 hypothetical protein.
  
     0.676
Tola_2220
KEGG: asa:ASA_1542 hypothetical protein; Belongs to the UPF0319 family.
  
     0.644
Tola_0835
PFAM: import inner membrane translocase subunit Tim44; KEGG: asa:ASA_3289 import inner membrane translocase.
  
     0.608
Tola_2822
PFAM: protein of unknown function DUF1451; KEGG: asa:ASA_1069 hypothetical protein.
  
     0.599
Tola_2708
TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: aha:AHA_3644 cyd operon protein YbgT.
  
     0.535
Tola_2760
KEGG: aha:AHA_0193 hypothetical protein.
  
     0.519
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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