STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1137PFAM: iron-containing alcohol dehydrogenase; KEGG: ypb:YPTS_3527 iron-containing alcohol dehydrogenase. (410 aa)    
Predicted Functional Partners:
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
 
 0.907
Tola_1892
PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: efe:EFER_3817 glycerol dehydrogenase, NAD.
     
 0.904
Tola_1492
PFAM: iron-containing alcohol dehydrogenase; KEGG: pin:Ping_2513 alcohol dehydrogenase, NAD(P)-dependent, iron-containing.
  
  
 
0.903
Tola_2654
PFAM: iron-containing alcohol dehydrogenase; KEGG: pin:Ping_2513 alcohol dehydrogenase, NAD(P)-dependent, iron-containing.
  
  
 
0.903
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.690
Tola_1996
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aha:AHA_1497 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.451
Tola_1399
PFAM: NAD-dependent epimerase/dehydratase; KEGG: pmy:Pmen_0809 3-beta hydroxysteroid dehydrogenase/isomerase.
  
    0.404
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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