STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1177PFAM: HpcH/HpaI aldolase; KEGG: kpn:KPN_02650 putative aldolase; Belongs to the HpcH/HpaI aldolase family. (268 aa)    
Predicted Functional Partners:
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
 
 0.976
Tola_1034
PFAM: class II aldolase/adducin family protein; KEGG: esa:ESA_03850 rhamnulose-1-phosphate aldolase.
  
 
  0.904
Tola_1176
PFAM: major facilitator superfamily MFS_1; KEGG: stm:STM2290 putative transport protein.
 
  
 0.839
Tola_1174
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: ecf:ECH74115_3389 transcriptional regulator, IclR family, C-terminal domain.
 
    0.608
Tola_1107
KEGG: mmw:Mmwyl1_0048 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.571
Tola_1178
PFAM: iron-containing alcohol dehydrogenase; KEGG: ypb:YPTS_0405 lactaldehyde reductase.
       0.464
Tola_2871
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ppg:PputGB1_1444 extradiol ring-cleavage dioxygenase class III protein subunit B.
  
  
 0.428
Tola_0415
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cko:CKO_03358 hypothetical protein.
  
  
 0.422
garD
Galactarate dehydratase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
    0.406
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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