STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1244KEGG: glo:Glov_1800 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Tola_1245
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_1801 protein of unknown function DUF214.
 
 
 
 0.966
Tola_1243
KEGG: glo:Glov_1799 hypothetical protein.
 
     0.952
Tola_1246
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_1802 ABC transporter related.
 
 
 
 0.931
macB
ABC transporter related; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
 
 0.643
Tola_0056
KEGG: asa:ASA_1294 outer membrane lipoprotein.
    
 
 0.620
Tola_2240
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: aha:AHA_2005 lipoprotein-releasing system transmembrane protein LolC.
 
 
 
 0.514
Tola_1133
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: aha:AHA_1280 major outer membrane protein OmpAII; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
 
 0.500
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.476
Tola_1353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2766 peptide ABC transporter.
   
 
 0.465
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
 
 0.460
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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